Like many other fans of the show, I had great expectations for the eighth and last season of Game of Thrones (GoT) that premiered on 14 April 2019. The much anticipated moment coincided with the few last days I spent finalising my last post on Bayesian models. Nonetheless, it provided a good testing ground for … Continue reading Twitter data analysis in R →

If there was something that always frustrated me was not fully understanding Bayesian inference. Sometime last year, I came across an article about a TensorFlow-supported R package for Bayesian analysis, called greta. Back then, I searched for greta tutorials and stumbled on this blog post that praised a textbook called Statistical Rethinking: A Bayesian Course with Examples in … Continue reading Bayesian models in R →

Among most popular off-the-shelf machine learning packages available to R, caret ought to stand out for its consistency. It reaches out to a wide range of dependencies that deploy and support model building using a uniform, simple syntax. I have been using caret extensively for the past three years, with a precious partial least squares (PLS) tutorial in … Continue reading The tidy caret interface in R →

Last time I promised to cover the graph-guided fused LASSO (GFLASSO) in a subsequent post. In the meantime, I wrote a GFLASSO R tutorial for DataCamp that you can freely access here, so give it a try! The plan here is to experiment with convolutional neural networks (CNNs), a form of deep learning. CNNs underlie … Continue reading Convolutional Neural Networks in R →

Statistical models generally assume that All observations are independent from each other The distribution of the residuals follows $latex \mathcal{N}(0, \sigma^2)&s=1$, irrespective of the values taken by the dependent variable y When any of the two is not observed, more sophisticated modelling approaches are necessary. Let's consider two hypothetical problems that violate the two respective assumptions, … Continue reading Linear mixed-effect models in R →

This time I elaborate on a much more specific subject that will mostly concern biologists and geneticists. I will try my best to outline the approach as to ensure non-experts will still have a basic understanding. This tutorial illustrates the power of genome-wide association (GWA) studies by mapping the genetic determinants of cholesterol levels using … Continue reading Genome-wide association studies in R →

My last entry introduces principal component analysis (PCA), one of many unsupervised learning tools. I concluded the post with a demonstration of principal component regression (PCR), which essentially is a ordinary least squares (OLS) fit using the first $latex k &s=1$ principal components (PCs) from the predictors. This brings about many advantages: There is virtually no … Continue reading Partial least squares in R →